PPDB

PPDB	The Plant Proteome Database

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AT1G52730.1 Transducin/WD40 repeat-like superfamily protein

Lab Annot.

transducin protein / WD-40 repeat protein
Mapman: 27.3.99 RNA.regulation of transcription.unclassified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G52730.2 11 Arabidopsis thaliana 0 343 100 100 38 (12) _
AT3G15610.1 11 Arabidopsis thaliana 0 342 91 94 18 (7) _
AT1G52730.3 11 Arabidopsis thaliana 0 264 100 100 0 (0) _
Os06g39760.1 7 Oryza sativa 0 334 80 89 4 (4) _
Os02g11060.1 7 Oryza sativa 0 340 77 88 0 (0) _
Os08g21660.1 7 Oryza sativa 1E-34 316 29 47 30 (30) M
Zm00001eb276870_P002 agpv5 Zea mays 0 340 80 89 0 (0) _
v1_GRMZM2G105398_P01 4a53 Zea mays 0 340 80 89 34 (34) _
Zm00001eb276870_P001 agpv5 Zea mays 0 359 73 82 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC4_WD40(5) eIF2A(2) Ge1_WD40(4) WD40(7)
TargetP:	Cytoplasm (Class 3 C0.079; M0.229; S0.117; _0.706)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	343 aa (-cTP 331)
Molecular Weight	37.75 kDA(-cTP )
PI	5.87(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
311	Detail								leaf [A. thaliana]	total leaf tissue	clpr2-1:R2-his6
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2223	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2286	Detail								[A. thaliana]		Clp C1 WT
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data