PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G52620.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

PPR 19 - pentatricopeptide repeat (PPR)
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

mitochondria (Pubmed: 28332713 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G74580.1 11 Arabidopsis thaliana 2E-78 691 26 46 1 (1) _
AT1G74580.3 11 Arabidopsis thaliana 2E-78 691 26 46 0 (0) _
AT1G74580.2 11 Arabidopsis thaliana 2E-78 691 26 46 0 (0) _
Os11g04295.1 7 Oryza sativa 0 825 40 58 0 (0) M
Os12g04110.1 7 Oryza sativa 0 813 40 58 0 (0) S
Os05g19390.1 7 Oryza sativa 2E-74 776 25 43 0 (0) M
v1_GRMZM2G353301_P01 4a53 Zea mays 1E-174 648 41 60 1 (1) _
GRMZM2G353301_P01 3.21 Zea mays 1E-174 648 41 60 0 (0) _
Zm00001eb196310_P001 agpv5 Zea mays 3E-173 648 41 60 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP13(3) Defensin_RK-1(3) Fer2_2(2) MRP-S27(4) PPR(17) PPR_1(16) PPR_2(14) PPR_3
TargetP:	Chloroplast (Class 5 C0.496; M0.437; S0.031; _0.084)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	819 aa (-cTP 789)
Molecular Weight	92.10 kDA(-cTP 88.73)
PI	6.67(-cTP 6.13)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19423572(stroma chloroplast (wt and clpr2-1))

Comparative Proteomics Data

Expr*	Source	Tech.	Spot	PepSeq	ChargeState(z)	AreaRatio	Ambiguity	Tissue	Sample from
180_181	clpr2-1 cICAT - exp1 / wt cICAT - exp1	cICAT	11	GDSVDNYSTCILVK + ICAT_l / GDSVDNYSTCILVK + ICAT_h	2	1.30		leaf [A. thaliana]	chloroplast stroma