PPDB

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AT1G51680.1 4-coumarate:CoA ligase 1

Lab Annot.

At4CL1 - 4-coumarate--CoA ligase
Mapman: 16.2.1.3 secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G51680.3 11 Arabidopsis thaliana 0 525 100 100 29 (12) _
AT1G51680.2 11 Arabidopsis thaliana 0 490 100 100 28 (12) _
AT3G21240.1 11 Arabidopsis thaliana 0 551 82 90 0 (0) _
Os02g08100.1 7 Oryza sativa 0 540 64 80 20 (20) _
Os06g44620.1 7 Oryza sativa 0 541 65 79 10 (10) _
Os02g46970.1 7 Oryza sativa 0 545 62 77 0 (0) _
Zm00001eb233720_P001 agpv5 Zea mays 0 539 61 76 0 (0) _
Zm00001eb187910_P002 agpv5 Zea mays 0 545 62 75 0 (0) S
v1_GRMZM2G054013_P03 4a53 Zea mays 0 545 62 75 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AMP-binding(1) AMP-binding_C(1)
TargetP:	Cytoplasm (Class 3 C0.218; M0.092; S0.116; _0.814)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	561 aa (-cTP 552)
Molecular Weight	61.05 kDA(-cTP )
PI	5.25(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
622	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1404	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1596	Detail								[A. thaliana]
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data