PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G51570.1   Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein

Lab Annot. C2 domain-containing protein
Mapman: 35.1.19 not assigned.no ontology.C2 domain-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G57880.1 11Arabidopsis thaliana077693963 (3)_
AT3G57880.4 11Arabidopsis thaliana077693960 (0)_
AT3G57880.3 11Arabidopsis thaliana077693960 (0)_
Os05g30750.7 7Oryza sativa077780910 (0)_
Os05g30750.3 7Oryza sativa077780910 (0)_
Os05g30750.6 7Oryza sativa077780910 (0)_
v1_GRMZM2G108149_P02 4a53Zea mays0778809034 (34)_
GRMZM2G108149_P02 3.21Zea mays0778809026 (26)_
GRMZM2G108149_P01 3.21Zea mays0778809026 (26)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: C2(3) DUF3292(2) DUF4131(3) DUF639(2) Pex24p(2) PRT_C(2) Reticulon(2)
TargetP: Cytoplasm (Class 2 C0.055; M0.166; S0.114; _0.936)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 3 TMs
TAT position:
Length 776 aa (-cTP 678)
Molecular Weight 89.15 kDA(-cTP )
PI 9.13(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

16287169(Cell Wall proteome)
16618929(ER-LOPIT-callus)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
21533090(plasmodesmata-crude)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help