PPDB

PPDB	The Plant Proteome Database

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AT1G51510.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

Y14; RNA binding / protein binding
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G64200.1 11 Arabidopsis thaliana 3E-08 88 27 56 3 (3) _
AT5G64200.2 11 Arabidopsis thaliana 3E-08 88 27 56 3 (3) _
AT5G54580.1 11 Arabidopsis thaliana 6E-08 65 35 55 15 (7) C
Os05g04850.1 7 Oryza sativa 1E-56 160 59 75 44 (44) _
Os03g59550.1 7 Oryza sativa 1E-45 132 58 72 0 (0) _
Os05g04850.2 7 Oryza sativa 1E-33 125 52 68 34 (34) _
GRMZM5G817255_P03 3.21 Zea mays 6E-56 169 56 73 14 (14) _
Zm00001eb354470_P001 agpv5 Zea mays 6E-56 169 56 73 0 (0) _
GRMZM5G803275_P01 3.21 Zea mays 1E-55 177 54 71 16 (16) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Methyltransf_15(1) RRM_1(1) RRM_3(1) RRM_5(1)
TargetP:	Cytoplasm (Class 2 C0.216; M0.047; S0.053; _0.873)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	202 aa (-cTP 141)
Molecular Weight	22.44 kDA(-cTP )
PI	5.21(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1577	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2218	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2219	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2220	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2222	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2223	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2299	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data