PPDB

PPDB	The Plant Proteome Database

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AT1G51160.1 SNARE-like superfamily protein

Lab Annot.

synbindin, putative
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G51160.3 11 Arabidopsis thaliana 4E-125 169 100 100 0 (0) _
AT1G51160.2 11 Arabidopsis thaliana 4E-125 169 100 100 26 (16) _
AT5G02280.1 11 Arabidopsis thaliana 1E-13 143 29 46 14 (11) _
Os01g33020.2 7 Oryza sativa 1E-82 147 73 91 15 (15) _
Os01g33020.1 7 Oryza sativa 2E-80 148 72 90 13 (13) _
Os06g05804.1 7 Oryza sativa 1E-09 141 25 45 5 (5) _
Zm00001eb217960_P001 agpv5 Zea mays 1E-86 177 68 84 0 (0) C
GRMZM2G010146_P01 3.21 Zea mays 1E-86 177 68 84 1 (1) C
GRMZM2G010146_P02 3.21 Zea mays 1E-86 177 68 84 1 (1) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Sedlin_N(1) Sybindin(1)
TargetP:	Cytoplasm (Class 4 C0.404; M0.097; S0.038; _0.745)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	169 aa (-cTP 152)
Molecular Weight	18.96 kDA(-cTP )
PI	9.21(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2287	Detail								[A. thaliana]		Clp C1 WT
2301	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data