PPDB

PPDB	The Plant Proteome Database

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AT1G50970.1 Membrane trafficking VPS53 family protein

Lab Annot.

Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G50970.2 11 Arabidopsis thaliana 0 543 94 94 0 (0) _
AT1G50970.3 11 Arabidopsis thaliana 0 484 98 98 0 (0) _
AT1G50500.4 11 Arabidopsis thaliana 0 434 67 74 0 (0) _
Os01g67880.1 7 Oryza sativa 9E-36 199 46 56 23 (23) M
Zm00001eb144220_P001 agpv5 Zea mays 9E-169 422 61 71 0 (0) _
GRMZM2G127756_P02 3.21 Zea mays 4E-62 231 50 60 2 (2) _
GRMZM2G127756_P01 3.21 Zea mays 6E-62 231 50 60 3 (3) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1415(2) DUF1664(2) Mt_ATP-synt_D(1) Occludin_ELL(1) RNase_P_pop3(2) Vps53_N(1
TargetP:	Secreted (Class 5 C0.071; M0.040; S0.532; _0.519)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	569 aa (-cTP 553)
Molecular Weight	64.12 kDA(-cTP )
PI	5.86(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data