PPDB

 The Plant Proteome Database

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AT1G50630.1   extracellular ligand-gated ion channel protein (DUF3537)
Lab Annot.
Mapman: 27.3.3 RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G50630.2 11Arabidopsis thaliana041498990 (0)_
AT3G20300.1 11Arabidopsis thaliana047177840 (0)_
AT4G22270.2 11Arabidopsis thaliana4E-13742852700 (0)_
Os06g42850.1 7Oryza sativa1E-13243748660 (0)_
Os04g37520.1 7Oryza sativa5E-11046444610 (0)C
Os02g35830.1 7Oryza sativa6E-10344045610 (0)C
Zm00001eb387500_P001 agpv5Zea mays2E-13844847640 (0)_
GRMZM2G104347_P01 3.21Zea mays2E-13844847640 (0)_
v1_GRMZM2G104347_P01 4a53Zea mays2E-13844847640 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF3537(1)
TargetP: Cytoplasm (Class 1 C0.102; M0.033; S0.005; _0.959)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 7 TMs
TAT position:
Length 453 aa (-cTP 405)
Molecular Weight 51.60 kDA(-cTP )
PI 6.20(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help