PPDB

PPDB	The Plant Proteome Database

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AT1G50600.1 scarecrow-like 5

Lab Annot.

Mapman: 33.99 development.unspecified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G50600.2 11 Arabidopsis thaliana 0 597 100 100 0 (0) M
AT1G50600.3 11 Arabidopsis thaliana 0 526 100 100 0 (0) _
AT5G48150.1 11 Arabidopsis thaliana 0 418 66 78 0 (0) _
Os07g39470.1 7 Oryza sativa 0 556 54 69 0 (0) _
Os10g22430.1 7 Oryza sativa 0 503 56 73 0 (0) _
Os03g09280.3 7 Oryza sativa 0 496 56 71 0 (0) M
v1_GRMZM2G431309_P01 4a53 Zea mays 0 487 58 73 0 (0) _
Zm00001eb107910_P001 agpv5 Zea mays 0 487 58 73 0 (0) _
Zm00001eb107910_P002 agpv5 Zea mays 0 487 58 73 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	GRAS(1) Macoilin(1)
TargetP:	Chloroplast (Class 5 C0.405; M0.401; S0.038; _0.071)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	597 aa (-cTP 536)
Molecular Weight	66.64 kDA(-cTP 59.82)
PI	5.77(-cTP 5.45)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2151	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data