PPDB

PPDB	The Plant Proteome Database

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AT1G50500.1 Membrane trafficking VPS53 family protein

Lab Annot.

HIT1 (HEAT-INTOLERANT 1); transporter
Mapman: 31.4 cell.vesicle transport

Curated Location

TAIR curated location: mitochondrion14671022

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G50500.3 11 Arabidopsis thaliana 0 828 100 100 0 (0) _
AT1G50500.2 11 Arabidopsis thaliana 0 847 97 97 4 (2) S
AT1G50500.4 11 Arabidopsis thaliana 0 828 99 99 0 (0) _
Os01g67880.1 7 Oryza sativa 0 398 72 85 23 (23) M
Zm00001eb144220_P001 agpv5 Zea mays 0 845 74 85 0 (0) _
GRMZM2G127756_P01 3.21 Zea mays 0 651 70 83 3 (3) _
GRMZM2G127756_P02 3.21 Zea mays 0 469 71 84 2 (2) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	COG2(1) COG5(1) COG7(2) DUF1664(2) DUF2884(1) DUF573(3) MCPsignal(1) NPV_P10(1)
TargetP:	Cytoplasm (Class 4 C0.298; M0.102; S0.087; _0.673)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	828 aa (-cTP 811)
Molecular Weight	92.53 kDA(-cTP )
PI	5.97(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
429	Detail								leaf [A. thaliana]
544	Detail								leaf [A. thaliana]	stroma (FPLC) <600 kDa (LMA)	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data