PPDB

The Plant Proteome Database

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AT1G49975.1   photosystem I reaction center subunit N

Lab Annot. unknown protein - weak PsaN domain
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os03g52130.1 7Oryza sativa5E-218857712 (2)M
GRMZM2G090112_P01 3.21Zea mays2E-139654653 (3)C
Zm00001eb056210_P001 agpv5Zea mays2E-139654650 (0)C
v1_GRMZM2G090112_P01 4a53Zea mays2E-139654653 (3)C

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: HTH_6(2) PsaN(1) RCS1(1)
TargetP: Chloroplast (Class 2 C0.873; M0.092; S0.102; _0.035)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 129 aa (-cTP 71)
Molecular Weight 14.73 kDA(-cTP 8.42)
PI 9.63(-cTP 8.82)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
875Detail       leaf [A. thaliana] chloroplast stromawild-type
1356Detail       leaf [A. thaliana] total tissue - low mass region wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help