PPDB

 The Plant Proteome Database

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AT1G49650.1   alpha/beta-Hydrolases superfamily protein
Lab Annot. alpha/beta-Hydrolase (perhaps plastid stroma)
Mapman: 26.57* misc.alpha/beta-Hydrolase family; 29.5.5.5.4* protein.degradation.serine protease.SC.S9
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G49660.1 11Arabidopsis thaliana4E-173317768619 (12)_
AT1G49640.1 11Arabidopsis thaliana7E-16531672860 (0)_
AT2G03550.1 11Arabidopsis thaliana3E-125315577119 (13)_
Os09g28750.1 7Oryza sativa3E-8432043612 (2)_
Os08g37060.1 7Oryza sativa3E-76317405811 (11)_
Os09g28720.1 7Oryza sativa1E-7331539570 (0)_
Zm00001eb100960_P001 agpv5Zea mays1E-8732245630 (0)_
GRMZM2G026095_P01 3.21Zea mays1E-8732245630 (0)_
v1_GRMZM2G026095_P01 4a53Zea mays1E-8732245630 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Abhydrolase_3(1) Chlorophyllase2(1) COesterase(2) Hydrolase_4(1) Say1_Mug180(1)
TargetP: Mitochondria (Class 5 C0.693; M0.703; S0.004; _0.002)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 374 aa (-cTP 321)
Molecular Weight 41.69 kDA(-cTP )
PI 6.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
622Detail       leaf [A. thaliana] total leaf tissue wild-type
869Detail       leaf [A. thaliana] chloroplast stromawild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1459Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 2)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1527Detail       leaf [A. thaliana] co-IP GST-ClpS 10ug bait stromaclpc1 x clps (rep. 2)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2208Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII
2290Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help