PPDB

PPDB	The Plant Proteome Database

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AT1G49600.1 RNA-binding protein 47A

Lab Annot.

RNA-binding protein 47A
Mapman: 27.3.99 RNA.regulation of transcription.unclassified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G49600.2 11 Arabidopsis thaliana 0 403 100 100 0 (0) _
AT1G49600.3 11 Arabidopsis thaliana 0 403 100 100 0 (0) _
AT3G19130.1 11 Arabidopsis thaliana 0 378 79 86 47 (28) _
Os09g28810.1 7 Oryza sativa 9E-137 331 59 74 6 (6) _
Os04g37690.1 7 Oryza sativa 7E-128 336 57 74 4 (4) C
Os04g37690.2 6 Oryza sativa 2E-122 293 59 78 2 (2) C
Zm00001eb315240_P002 agpv5 Zea mays 2E-133 402 53 66 0 (0) _
v1_GRMZM2G467907_P01 4a53 Zea mays 7E-133 401 53 67 3 (3) _
GRMZM2G467907_P01 3.21 Zea mays 7E-133 401 53 67 2 (2) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Activator_LAG-3(1) DUF1866(1) Nup35_RRM_2(2) PAT1(1) RRM_1(3) RRM_3(2) RRM_5(3)
TargetP:	Cytoplasm (Class 5 C0.621; M0.075; S0.091; _0.695)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	445 aa (-cTP 385)
Molecular Weight	48.48 kDA(-cTP )
PI	5.65(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2218	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2219	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2220	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2221	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2222	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2223	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2284	Detail								[A. thaliana]		Clp C1 WT
2285	Detail								[A. thaliana]		Clp C1 TRAP
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data