PPDB

PPDB	The Plant Proteome Database

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AT1G49480.1 related to vernalization1 1

Lab Annot.

RTV1 (RELATED TO VERNALIZATION1 1); DNA binding / transcription factor
Mapman: 27.3.41 RNA.regulation of transcription.B3 transcription factor family

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G49480.3 11 Arabidopsis thaliana 2E-168 226 100 100 0 (0) _
AT1G49480.2 11 Arabidopsis thaliana 2E-168 226 100 100 0 (0) _
AT3G18990.1 11 Arabidopsis thaliana 3E-129 234 81 87 1 (0) _
Os11g09160.2 7 Oryza sativa 1E-12 124 33 56 0 (0) _
Os11g09160.1 7 Oryza sativa 2E-12 124 33 56 0 (0) _
Os01g52514.1 7 Oryza sativa 4E-12 130 33 50 0 (0) _
Zm00001eb168870_P001 agpv5 Zea mays 1E-09 125 33 50 0 (0) M
GRMZM2G001048_P01 3.21 Zea mays 1E-09 125 33 50 0 (0) M
v1_GRMZM2G001048_P01 4a53 Zea mays 1E-09 125 33 50 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	B3(1) PRP38_assoc(1)
TargetP:	Cytoplasm (Class 3 C0.053; M0.273; S0.020; _0.810)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	226 aa (-cTP 213)
Molecular Weight	25.85 kDA(-cTP )
PI	9.19(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1404	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data