PPDB

PPDB	The Plant Proteome Database

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AT1G49250.1 ATP-dependent DNA ligase

Lab Annot.

Mapman: 28.1 DNA.synthesis/chromatin structure

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G08130.1 11 Arabidopsis thaliana 0 681 73 83 14 (2) C
AT1G66730.1 11 Arabidopsis thaliana 3E-133 613 39 60 0 (0) C
AT5G57160.1 11 Arabidopsis thaliana 2E-21 507 25 44 0 (0) _
Os10g34750.1 7 Oryza sativa 0 589 63 80 23 (23) _
Os10g34750.2 7 Oryza sativa 0 589 63 80 23 (23) _
Os01g49180.1 7 Oryza sativa 3E-132 671 35 55 0 (0) C
GRMZM2G071304_P01 3.21 Zea mays 0 602 63 80 47 (17) C
Zm00001eb045200_P002 agpv5 Zea mays 0 602 63 80 0 (0) C
Zm00001eb045200_P001 agpv5 Zea mays 0 602 63 80 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DNA_ligase_A_C(1) DNA_ligase_A_M(1) DNA_ligase_A_N(1) DUF1126(1) RNA_ligase(1)
TargetP:	Cytoplasm (Class 3 C0.151; M0.165; S0.035; _0.755)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	657 aa (-cTP 654)
Molecular Weight	73.48 kDA(-cTP )
PI	7.52(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data