PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G49230.1   RING/U-box superfamily protein

Lab Annot. RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G49200.1 11Arabidopsis thaliana1E-6521549660 (0)C
AT1G49210.1 11Arabidopsis thaliana1E-6321050680 (0)_
AT1G49220.1 11Arabidopsis thaliana5E-6121549650 (0)_
Os04g34230.1 7Oryza sativa3E-4919745610 (0)C
Os02g33720.1 7Oryza sativa1E-3815246590 (0)_
Os12g02350.1 7Oryza sativa4E-3412546640 (0)_
GRMZM2G059110_P01 3.21Zea mays3E-4920144600 (0)_
v1_GRMZM2G059110_P01 4a53Zea mays3E-4920144600 (0)_
v1_GRMZM2G451308_P01 4a53Zea mays4E-4722342560 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF116(1) FANCL_C(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(2) zf-C3HC4_3(1) zf-rb
TargetP: Cytoplasm (Class 4 C0.223; M0.061; S0.027; _0.542)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 219 aa (-cTP 137)
Molecular Weight 24.29 kDA(-cTP )
PI 7.00(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help