PPDB

PPDB	The Plant Proteome Database

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AT1G49200.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G49220.1 11 Arabidopsis thaliana 5E-138 252 76 82 0 (0) _
AT1G49210.1 11 Arabidopsis thaliana 4E-136 226 84 91 0 (0) _
AT3G18773.1 11 Arabidopsis thaliana 4E-109 227 68 79 0 (0) _
Os04g34230.1 7 Oryza sativa 2E-41 214 40 53 0 (0) C
Os02g33720.1 7 Oryza sativa 1E-29 177 37 50 0 (0) _
Os11g02424.1 7 Oryza sativa 2E-29 129 42 60 0 (0) C
GRMZM2G059110_P01 3.21 Zea mays 6E-41 200 40 54 0 (0) _
v1_GRMZM2G059110_P01 4a53 Zea mays 6E-41 200 40 54 0 (0) _
v1_GRMZM2G451308_P01 4a53 Zea mays 5E-34 228 36 49 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF116(1) FANCL_C(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC4_3(1) zf-rb
TargetP:	Chloroplast (Class 5 C0.355; M0.068; S0.029; _0.294)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	226 aa (-cTP 187)
Molecular Weight	24.79 kDA(-cTP 20.48)
PI	8.24(-cTP 8.27)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data