PPDB

The Plant Proteome Database

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AT1G48720.1   Copia-like polyprotein/retrotransposon

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G20980.1 11Arabidopsis thaliana4E-069834460 (0)_
Os05g45550.1 7Oryza sativa2E-148538600 (0)_
Os10g01750.1 7Oryza sativa4E-148538580 (0)_
Os03g26290.1 7Oryza sativa4E-148538580 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF4219(1) Retrotran_gag_2(1) SPT6_acidic(1)
TargetP: Cytoplasm (Class 4 C0.147; M0.211; S0.127; _0.493)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 97 aa (-cTP 86)
Molecular Weight 10.92 kDA(-cTP )
PI 5.10(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


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