PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G48660.1   Auxin-responsive GH3 family protein
Lab Annot. Auxin-responsive GH3 protein
Mapman: 17.2.3 hormone metabolism.auxin.induced-regulated-responsive-activated
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G48660.2 11Arabidopsis thaliana057699990 (0)_
AT1G48670.1 11Arabidopsis thaliana057468771 (1)_
AT5G51470.1 11Arabidopsis thaliana058162770 (0)_
Os07g47490.2 7Oryza sativa057546670 (0)_
Os07g47490.1 7Oryza sativa057546670 (0)_
Os07g47490.3 7Oryza sativa057046670 (0)_
GRMZM2G053338_P03 3.21Zea mays2E-17657243630 (0)_
Zm00001eb326420_P001 agpv5Zea mays2E-17657243630 (0)_
v1_GRMZM2G053338_P02 4a53Zea mays2E-17657243630 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: GH3(1)
TargetP: Cytoplasm (Class 3 C0.103; M0.059; S0.237; _0.802)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 573 aa (-cTP 485)
Molecular Weight 64.12 kDA(-cTP )
PI 5.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1368Detail        [A. thaliana] chloroplast fractionation  
1387Detail        [A. thaliana] chloroplast fractionation  
1388Detail        [A. thaliana] chloroplast fractionation  
1584Detail        [A. thaliana]  
1587Detail        [A. thaliana]  
1650Detail       leaf [A. thaliana] plastoglobules plastoglobulem48
1654Detail        [A. thaliana]  
1655Detail        [A. thaliana]  
1683Detail        [A. thaliana] t1-t2xt2-t1/T1strepII
1684Detail        [A. thaliana] t1-t2xt2-t1/T2strepII
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2004Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2120Detail       leaf [A. thaliana] Stroma stromacGep
2190Detail        [A. thaliana] plastid stroma stromaP3-strepII 31
2191Detail        [A. thaliana] plastid stroma stromaP3-trap-strepII 40
2192Detail        [A. thaliana] total soluble P3-trap-strepII 16
2303Detail        [A. thaliana] Clp C1 WT
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19334764(plasma membrane (cell culture))
19888209(leaves)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help