PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G48650.1 DEA(D/H)-box RNA helicase family protein

Lab Annot.

helicase domain-containing protein
Mapman: 28.99 DNA.unspecified

Curated Location

plastid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G48650.2 11 Arabidopsis thaliana 0 1187 99 99 23 (8) C
AT2G01130.1 11 Arabidopsis thaliana 0 1107 64 78 0 (0) M
AT2G01130.2 11 Arabidopsis thaliana 0 1052 66 80 0 (0) _
Os03g53760.1 7 Oryza sativa 0 1072 63 79 0 (0) M
Os01g02884.1 7 Oryza sativa 0 799 75 86 0 (0) M
Os10g33275.1 7 Oryza sativa 0 895 49 67 2 (2) M
v1_GRMZM2G373175_P02 4a53 Zea mays 0 847 73 86 6 (6) C
Zm00001eb057210_P002 agpv5 Zea mays 0 1124 58 73 0 (0) M
Zm00001eb057210_P003 agpv5 Zea mays 0 1154 56 72 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_19(1) AAA_22(1) AAA_30(1) ATPase(2) DEAD(1) dsrm(1) HA2(1) Helicase_C(1) NAC
TargetP:	Chloroplast (Class 5 C0.349; M0.230; S0.005; _0.092)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1197 aa (-cTP 1127)
Molecular Weight	134.25 kDA(-cTP 126.41)
PI	9.10(-cTP 8.80)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data