PPDB

 The Plant Proteome Database

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AT1G48620.1   high mobility group A5
Lab Annot. histone H1/H5 family
Mapman: 28.1.3 DNA.synthesis/chromatin structure.histone
Curated Location nucleus
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G18035.1 11Arabidopsis thaliana5E-106528505828 (10)_
AT3G18035.2 11Arabidopsis thaliana5E-7742448570 (0)_
AT1G14900.1 11Arabidopsis thaliana3E-1212634460 (0)_
Os05g51850.1 7Oryza sativa2E-1220828421 (1)_
Os05g51850.2 7Oryza sativa2E-128339651 (1)_
Os08g33190.1 7Oryza sativa4E-11115374624 (24)_
GRMZM2G106133_P02 3.21Zea mays3E-19121445745 (45)_
Zm00001eb041850_P001 agpv5Zea mays3E-1912144570 (0)_
v1_GRMZM2G106133_P02 4a53Zea mays3E-19121445749 (49)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AT_hook(6) Linker_histone(1)
TargetP: Chloroplast (Class 3 C0.889; M0.026; S0.035; _0.398)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 479 aa (-cTP 386) (-lTP 392)
Molecular Weight 51.39 kDA(-cTP 41.44)(-lTP 42.08)
PI 9.80(-cTP 10.13)(-lTP 9.990)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
106Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1518Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1575Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1627Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopeWild-type
1628Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopek1xk3
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
15496452(nucleolus)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
19995723(chloroplast reference proteome)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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