PPDB

PPDB	The Plant Proteome Database

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AT1G48460.1 tRNA-processing ribonuclease BN

Lab Annot.

unknown protein
Mapman: 35.2 not assigned.unknown

Curated Location

envelope (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G48460.2 11 Arabidopsis thaliana 0 340 89 89 0 (0) C
AT5G63040.1 11 Arabidopsis thaliana 4E-29 260 32 49 3 (3) C
AT5G63040.2 11 Arabidopsis thaliana 6E-29 269 32 49 3 (3) M
Os01g50830.1 7 Oryza sativa 4E-46 274 32 54 0 (0) C
Os01g50830.2 7 Oryza sativa 2E-28 205 31 54 0 (0) M
Zm00001eb155560_P002 agpv5 Zea mays 2E-43 252 34 55 0 (0) C
GRMZM2G034975_P01 3.21 Zea mays 2E-43 252 34 55 0 (0) C
v1_GRMZM2G034975_P01 4a53 Zea mays 2E-43 252 34 55 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:
TargetP:	Chloroplast (Class 2 C0.865; M0.154; S0.002; _0.023)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	5 TMs
Aramemnon:	5 TMs
TAT position:
Length	340 aa (-cTP 258)
Molecular Weight	38.07 kDA(-cTP 28.86)
PI	9.69(-cTP 8.72)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data