PPDB

 The Plant Proteome Database

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AT1G48450.1   alanine-tRNA ligase%2C putative (DUF760)
Lab Annot. DUF760-2
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G48450.2 11Arabidopsis thaliana0326100100176 (36)C
AT1G48450.3 11Arabidopsis thaliana0321100100176 (36)C
AT3G17800.1 11Arabidopsis thaliana04336982251 (56)C
Os03g50870.1 7Oryza sativa3E-15039659734 (4)_
Os04g50860.1 7Oryza sativa2E-9738343620 (0)C
Os11g26890.2 7Oryza sativa2E-4935834530 (0)_
GRMZM2G046849_P01 3.21Zea mays1E-14934664780 (0)C
Zm00001eb055310_P001 agpv5Zea mays1E-14934664780 (0)C
v1_GRMZM2G046849_P01 4a53Zea mays1E-14934664781 (1)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF760(2)
TargetP: Chloroplast (Class 2 C0.839; M0.036; S0.002; _0.089)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 423 aa (-cTP 352)
Molecular Weight 47.19 kDA(-cTP 39.21)
PI 5.86(-cTP 5.07)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap
2265Detail       leaf [A. thaliana] stroma Clp stromaClp C1 trap
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2285Detail        [A. thaliana] Clp C1 TRAP
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

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