PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G48320.1   Thioesterase superfamily protein

Lab Annot. DHNA-CoA Thioesterase DHNAT1 (MenI)
Mapman: 18.5 Co-factor and vitamine metabolism.folate & vitamine K
Curated Location peroxisome (Pubmed: 21472859 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G48950.1 11Arabidopsis thaliana5E-6514466810 (0)_
AT5G48950.2 11Arabidopsis thaliana2E-4410168830 (0)_
Os03g48480.1 7Oryza sativa9E-6516457702 (2)_
Os05g04660.1 7Oryza sativa2E-4914652711 (1)_
Os07g27870.1 7Oryza sativa3E-0610532500 (0)C
GRMZM5G861357_P01 3.21Zea mays4E-68141658033 (6)_
Zm00001eb217120_P001 agpv5Zea mays4E-6814165800 (0)_
GRMZM2G108135_P01 3.21Zea mays1E-6414959774 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 4HBT(1) 4HBT_3(1)
TargetP: Cytoplasm (Class 3 C0.286; M0.028; S0.036; _0.774)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 156 aa (-cTP 97)
Molecular Weight 16.71 kDA(-cTP )
PI 9.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2286Detail        [A. thaliana] Clp C1 WT
2311Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19329564(peroxisomes (leaf))
21311031(mitochondria)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help