PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G48240.1 Putative plant snare 12

Lab Annot.

ATNPSN12 (novel plant SNARE 12); protein transporter
Mapman: 29.3.4.99 protein.targeting.secretory pathway.unspecified

Curated Location

plasma membrane

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G17440.1 11 Arabidopsis thaliana 3E-175 264 92 96 3 (3) _
AT1G48240.2 11 Arabidopsis thaliana 2E-158 214 100 100 0 (0) _
AT3G17440.2 11 Arabidopsis thaliana 4E-142 213 91 96 2 (2) _
Os07g44350.1 7 Oryza sativa 3E-130 262 73 87 12 (12) _
Os03g25390.1 7 Oryza sativa 4E-129 268 72 85 0 (0) _
Os03g25390.2 7 Oryza sativa 1E-120 308 62 74 0 (0) _
GRMZM2G000718_P01 3.21 Zea mays 6E-130 261 73 85 1 (1) _
Zm00001eb328740_P001 agpv5 Zea mays 6E-130 261 73 85 0 (0) _
v1_GRMZM2G000718_P01 4a53 Zea mays 6E-130 261 73 85 1 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cauli_AT(2) CCDC-167(2) CSN5_C(2) DUF2203(3) DUF3450(2) DUF948(3) Helo_like_N(2)
TargetP:	Cytoplasm (Class 2 C0.187; M0.121; S0.041; _0.835)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	265 aa (-cTP 240)
Molecular Weight	29.89 kDA(-cTP )
PI	7.69(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
17644812(plasma membrane - suspension cells)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
21533090(plasmodesmata-crude)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data