PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G48100.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G02460.1 11 Arabidopsis thaliana 2E-178 394 60 77 0 (0) M
AT1G56710.1 11 Arabidopsis thaliana 1E-174 406 56 75 0 (0) S
AT4G01890.1 11 Arabidopsis thaliana 1E-164 391 56 73 0 (0) S
Os05g20020.1 7 Oryza sativa 0 420 67 78 0 (0) S
Os01g22590.1 7 Oryza sativa 2E-172 405 59 73 0 (0) C
Os01g19170.1 7 Oryza sativa 7E-168 470 52 65 0 (0) S
v1_GRMZM2G467435_P01 4a53 Zea mays 1E-180 467 57 73 0 (0) M
Zm00001eb131090_P005 agpv5 Zea mays 1E-180 467 57 73 0 (0) M
Zm00001eb131090_P002 agpv5 Zea mays 1E-180 467 57 73 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) Glyco_hydro_28(1) NosD(1) Pectate_lyase_3(3)
TargetP:	Mitochondria (Class 5 C0.021; M0.403; S0.373; _0.017)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	475 aa (-cTP 415)
Molecular Weight	51.35 kDA(-cTP )
PI	4.80(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data