PPDB

The Plant Proteome Database

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AT1G48100.1   Pectin lyase-like superfamily protein

Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G02460.1 11Arabidopsis thaliana2E-17839460770 (0)M
AT1G56710.1 11Arabidopsis thaliana1E-17440656750 (0)S
AT4G01890.1 11Arabidopsis thaliana1E-16439156730 (0)S
Os05g20020.1 7Oryza sativa042067780 (0)S
Os01g22590.1 7Oryza sativa2E-17240559730 (0)C
Os01g19170.1 7Oryza sativa7E-16847052650 (0)S
v1_GRMZM2G467435_P01 4a53Zea mays1E-18046757730 (0)M
Zm00001eb131090_P005 agpv5Zea mays1E-18046757730 (0)M
Zm00001eb131090_P002 agpv5Zea mays1E-18046757730 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Beta_helix(1) Glyco_hydro_28(1) NosD(1) Pectate_lyase_3(3)
TargetP: Mitochondria (Class 5 C0.021; M0.403; S0.373; _0.017)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 475 aa (-cTP 415)
Molecular Weight 51.35 kDA(-cTP )
PI 4.80(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help