PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G47830.1   SNARE-like superfamily protein

Lab Annot. clathrin coat assembly protein
Mapman: 31.4 cell.vesicle transport
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G35410.2 11Arabidopsis thaliana2E-5214153735 (1)M
AT2G17380.1 11Arabidopsis thaliana3E-52141537322 (17)M
AT2G19790.1 11Arabidopsis thaliana2E-3813947683 (0)M
Os12g10560.1 7Oryza sativa1E-9514195973 (3)M
Os03g59660.1 7Oryza sativa1E-5114153730 (0)M
Os03g57040.2 7Oryza sativa2E-51141537229 (29)M
Zm00001eb112310_P001 agpv5Zea mays4E-9614295970 (0)M
AC195874.2_FGP002 3.21Zea mays4E-9614295977 (0)M
GRMZM2G052713_P01 3.21Zea mays3E-9514295970 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Clat_adaptor_s(1)
TargetP: Mitochondria (Class 4 C0.011; M0.804; S0.014; _0.522)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 142 aa (-cTP 136)
Molecular Weight 17.07 kDA(-cTP )
PI 6.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
2251Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help