PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G47610.1   Transducin/WD40 repeat-like superfamily protein

Lab Annot.
Mapman: 28.1 DNA.synthesis/chromatin structure
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G26490.1 11Arabidopsis thaliana5E-16033868800 (0)_
AT1G49450.1 11Arabidopsis thaliana5E-14534862740 (0)_
AT3G18950.1 11Arabidopsis thaliana3E-14333961750 (0)_
Os03g52870.1 7Oryza sativa2E-14135162740 (0)_
Os12g40260.1 7Oryza sativa1E-12733955740 (0)_
Os03g42710.1 7Oryza sativa2E-11634751690 (0)C
Zm00001eb056560_P001 agpv5Zea mays4E-13135261730 (0)_
GRMZM5G852097_P01 3.21Zea mays4E-13135261730 (0)_
Zm00001eb215260_P001 agpv5Zea mays4E-13035161740 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ANAPC4_WD40(3) BBS2_Mid(2) Nucleoporin_N(4) Nup160(2) PQQ_3(6) SnoaL_4(2) W_rich
TargetP: Cytoplasm (Class 2 C0.026; M0.265; S0.036; _0.933)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 351 aa (-cTP 282)
Molecular Weight 38.71 kDA(-cTP )
PI 9.37(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help