PPDB

 The Plant Proteome Database

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AT1G47490.1   RNA-binding protein 47C
Lab Annot. RNA-binding protein 47C
Mapman: 27.3.99 RNA.regulation of transcription.unclassified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G47500.1 11Arabidopsis thaliana043488910 (0)_
AT1G47490.2 11Arabidopsis thaliana030899995 (2)_
AT1G47500.2 11Arabidopsis thaliana1E-17430983880 (0)_
Os09g28810.1 7Oryza sativa3E-14933765776 (6)_
Os04g37690.1 7Oryza sativa9E-13233158744 (4)C
Os03g37270.2 6Oryza sativa3E-119336557011 (11)_
Zm00001eb315240_P002 agpv5Zea mays2E-14538859700 (0)_
v1_GRMZM2G467907_P01 4a53Zea mays3E-14338859693 (3)_
GRMZM2G467907_P01 3.21Zea mays3E-14338859692 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cas_Cas2CT1978(1) DUF4078(1) Nup35_RRM_2(1) RRM_1(3) RRM_3(2) RRM_7(3) RRM_occlu
TargetP: Cytoplasm (Class 3 C0.399; M0.029; S0.063; _0.852)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 432 aa (-cTP 344)
Molecular Weight 48.50 kDA(-cTP )
PI 6.11(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 17216043(leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help