PPDB

PPDB	The Plant Proteome Database

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AT1G44910.1 pre-mRNA-processing protein 40A

Lab Annot.

pre-mRNA-processing protein 40A
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G44910.2 11 Arabidopsis thaliana 0 922 100 100 3 (2) C
AT3G19670.1 11 Arabidopsis thaliana 0 1014 39 58 0 (0) _
AT3G19670.2 11 Arabidopsis thaliana 0 1014 39 58 0 (0) _
Os01g34780.1 7 Oryza sativa 3E-113 276 61 81 9 (9) _
Os01g34780.2 7 Oryza sativa 3E-113 276 61 81 9 (9) _
Os10g34380.1 7 Oryza sativa 4E-30 704 25 41 12 (12) _
Zm00001eb162920_P005 agpv5 Zea mays 0 1003 49 67 0 (0) C
Zm00001eb162920_P001 agpv5 Zea mays 0 1003 49 67 0 (0) C
Zm00001eb162920_P003 agpv5 Zea mays 0 1003 49 67 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	FF(5) WW(2)
TargetP:	Chloroplast (Class 5 C0.335; M0.257; S0.005; _0.301)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	958 aa (-cTP 930)
Molecular Weight	109.38 kDA(-cTP 106.39)
PI	6.09(-cTP 6.02)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1576	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data