PPDB

 The Plant Proteome Database

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AT1G43190.1   polypyrimidine tract-binding protein 3
Lab Annot. polypyrimidine tract-binding protein 3
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G43190.2 11Arabidopsis thaliana043210010077 (22)_
AT1G43190.3 11Arabidopsis thaliana0432999977 (22)_
AT3G01150.1 11Arabidopsis thaliana4E-4435432530 (0)_
Os05g36120.1 7Oryza sativa044571849 (9)_
Os01g64770.1 7Oryza sativa0444688213 (13)_
Os01g64770.2 7Oryza sativa0444678113 (13)_
GRMZM2G052926_P01 3.21Zea mays0445708554 (9)_
v1_GRMZM2G052926_P01 4a53Zea mays044570856 (6)_
v1_GRMZM2G070113_P01 4a53Zea mays0446708517 (17)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF1797(1) DUF3587(2) Nup35_RRM_2(1) RL(4) RRM_1(4) RRM_3(2) RRM_5(4) RRM_7(3) R
TargetP: Cytoplasm (Class 1 C0.101; M0.040; S0.063; _0.904)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 432 aa (-cTP 356)
Molecular Weight 48.23 kDA(-cTP )
PI 6.35(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2249Detail       seedlings [A. thaliana] total tissue gfs9
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help