PPDB

PPDB	The Plant Proteome Database

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AT1G43190.1 polypyrimidine tract-binding protein 3

Lab Annot.

polypyrimidine tract-binding protein 3
Mapman: 27.1 RNA.processing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G43190.2 11 Arabidopsis thaliana 0 432 100 100 80 (16) _
AT1G43190.3 11 Arabidopsis thaliana 0 432 99 99 80 (16) _
AT3G01150.1 11 Arabidopsis thaliana 4E-44 354 32 53 0 (0) _
Os05g36120.1 7 Oryza sativa 0 445 71 84 9 (9) _
Os01g64770.1 7 Oryza sativa 0 444 68 82 13 (13) _
Os01g64770.2 7 Oryza sativa 0 444 67 81 13 (13) _
GRMZM2G052926_P01 3.21 Zea mays 0 445 70 85 54 (9) _
v1_GRMZM2G052926_P01 4a53 Zea mays 0 445 70 85 6 (6) _
v1_GRMZM2G070113_P01 4a53 Zea mays 0 446 70 85 17 (17) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1797(1) DUF3587(2) Nup35_RRM_2(1) RL(4) RRM_1(4) RRM_3(2) RRM_5(4) RRM_7(3) R
TargetP:	Cytoplasm (Class 1 C0.101; M0.040; S0.063; _0.904)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	432 aa (-cTP 356)
Molecular Weight	48.23 kDA(-cTP )
PI	6.35(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1932	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2253	Detail								seedlings [A. thaliana]	total tissue	atg5
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2400	Detail								leaf-soluble [A. thaliana]	GFP-nano-trap	wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data