PPDB

The Plant Proteome Database

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AT1G42470.1   Patched family protein

Lab Annot. Patched protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G38350.1 11Arabidopsis thaliana01251698390 (90)S
AT4G38350.2 11Arabidopsis thaliana01275678287 (87)S
Os04g47590.1 7Oryza sativa0131151650 (0)M
Zm00001eb429140_P002 agpv5Zea mays0127962790 (0)S
Zm00001eb429140_P001 agpv5Zea mays0127862790 (0)S
Zm00001eb429140_P004 agpv5Zea mays0127862790 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: MMPL(2) NPC1_N(1) Patched(3) Sterol-sensing(2)
TargetP: Cytoplasm (Class 3 C0.029; M0.188; S0.218; _0.650)
Predotar:
Subcel. Location:
TM-HMM prediction: 14 TMs
Aramemnon: 12 TMs
TAT position:
Length 1260 aa (-cTP 1185)
Molecular Weight 138.28 kDA(-cTP )
PI 7.72(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
19546170(mature pollen grains)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19334764(plasma membrane (cell culture))
21533090(plasmodesmata-crude)
20733066(phosphoproteome-ABA-leaf)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help