PPDB

The Plant Proteome Database

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AT1G33410.1   SUPPRESSOR OF AUXIN RESISTANCE1

Lab Annot. Nucleoporin Nup160
Mapman: 29.3.1 protein.targeting.nucleus
Curated Location nucleus (Pubmed: 21189294 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G33410.2 11Arabidopsis thaliana0150499994 (4)_
Os02g04970.1 7Oryza sativa01507426126 (26)_
Zm00001eb232140_P001 agpv5Zea mays0150742600 (0)_
Zm00001eb232140_P002 agpv5Zea mays0115241580 (0)_
Zm00001eb232140_P003 agpv5Zea mays2E-17894038560 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF5311(1) Nup160(1)
TargetP: Cytoplasm (Class 2 C0.224; M0.064; S0.030; _0.866)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1500 aa (-cTP 1464)
Molecular Weight 168.92 kDA(-cTP )
PI 5.75(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help