PPDB

 The Plant Proteome Database

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AT1G32550.1   2Fe-2S ferredoxin-like superfamily protein
Lab Annot. FdC1
Mapman: 1.1.5.2 PS.lightreaction.other electron carrier (ox/red).ferredoxin
Curated Location plastid (Pubmed: 23198870 20966083 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G32550.2 11Arabidopsis thaliana3E-127197909024 (14)C
AT2G27510.1 11Arabidopsis thaliana3E-168240590 (0)C
AT1G10960.1 11Arabidopsis thaliana2E-1575426287 (87)C
Os03g48040.1 7Oryza sativa4E-85183677713 (13)C
Os03g48040.2 7Oryza sativa5E-8218366765 (5)C
Os05g37140.2 7Oryza sativa2E-218643634 (4)C
Zm00001eb217230_P001 agpv5Zea mays1E-8213084940 (0)C
GRMZM2G002754_P01 3.21Zea mays1E-82130849414 (14)C
v1_GRMZM2G002754_P01 4a53Zea mays6E-234979896 (6)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Fer2(1) Fer2_3(1)
TargetP: Chloroplast (Class 5 C0.478; M0.341; S0.021; _0.103)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 181 aa (-cTP 137)
Molecular Weight 20.38 kDA(-cTP 15.27)
PI 5.57(-cTP 4.85)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2034Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2056Detail       Total leaf [A. thaliana] chloroplast stromawt and cgep
2112Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 20061580(chloroplast envelope (inner+outer))
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help