PPDB

 The Plant Proteome Database

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AT1G32340.1   NDR1/HIN1-like 8
Lab Annot. NHL8 (NDR1/HIN1-like 8); protein binding / zinc ion binding
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G14250.1 11Arabidopsis thaliana8E-1621326430 (0)_
AT2G16090.4 11Arabidopsis thaliana3E-1421926410 (0)_
AT2G16090.1 11Arabidopsis thaliana3E-1421926410 (0)_
Os04g50720.1 7Oryza sativa052454680 (0)C
Os04g50760.1 7Oryza sativa2E-12239945640 (0)_
Os02g46720.1 7Oryza sativa8E-10533246660 (0)S
v1_GRMZM2G342039_P01 4a53Zea mays052754670 (0)M
GRMZM2G342039_P01 3.21Zea mays052754671 (1)M
Zm00001eb072220_P001 agpv5Zea mays052754670 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: IBR(5) RWD(1) zf-C3HC4(2) zf-RING_2(2) zf-RING_5(2)
TargetP: Mitochondria (Class 5 C0.032; M0.645; S0.003; _0.459)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 688 aa (-cTP 586)
Molecular Weight 78.60 kDA(-cTP )
PI 5.98(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help