PPDB

The Plant Proteome Database

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AT1G32050.1   SCAMP family protein

Lab Annot. SCAMP protein
Mapman: 34.99 transport.misc
Curated Location
TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G61250.1 11Arabidopsis thaliana3E-111271567313 (13)_
AT1G61250.2 11Arabidopsis thaliana2E-10526256729 (9)_
AT1G11180.1 11Arabidopsis thaliana7E-10427455711 (1)_
Os04g50890.1 7Oryza sativa2E-13027266772 (2)_
Os02g47010.1 7Oryza sativa2E-12328160743 (3)_
Os07g37740.1 7Oryza sativa2E-10729353680 (0)_
GRMZM2G364060_P03 3.21Zea mays3E-131269667913 (13)_
GRMZM2G364060_P05 3.21Zea mays3E-131269667913 (13)_
Zm00001eb430100_P001 agpv5Zea mays3E-13126966790 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF4229(2) LTV(1) SCAMP(1)
TargetP: Cytoplasm (Class 3 C0.273; M0.090; S0.128; _0.858)
Predotar:
Subcel. Location:
TM-HMM prediction: 4 TMs
Aramemnon: 4 TMs
TAT position:
Length 264 aa (-cTP 236)
Molecular Weight 30.06 kDA(-cTP )
PI 7.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1428Detail        [A. thaliana] total leaf tissue 1.11 Prep1_Prep2_t1_t2
1579Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1583Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
15060130(Plasma Membrane proteome)
17317660(Plasma Membrane proteome)
19036721(sterol dependent detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
21826108(SYP trans-Golgi-filtered)
21166475(cytosolic-fractions-crude)
20843791(DRM-enriched plasmamembrane)
21173025(root proteome)
22430844(Golgi-cell-culture)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help