PPDB

The Plant Proteome Database

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AT1G31817.1   Ribosomal L18p/L5e family protein

Lab Annot. NFD3 (NUCLEAR FUSION DEFECTIVE 3); structural constituent of ribosome
Mapman: 29.2.1.1.2.1.11 protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.30S subunit.S11
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
ATCG00750.1 11Arabidopsis thaliana5E-091203248627 (554)C
Os03g26860.1 7Oryza sativa6E-4013650704 (4)M
Os01g42640.1 7Oryza sativa2E-3713647690 (0)M
Osm1g00410.1 7Oryza sativa1E-3213046690 (0)?
v1_GRMZM2G171159_P01 4a53Zea mays6E-3812152713 (3)M
GRMZM2G045818_P02 3.21Zea mays6E-3712152712 (2)M
GRMZM2G045818_P01 3.21Zea mays6E-3712152712 (2)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ribosomal_L18p(1) Ribosomal_S11(1)
TargetP: Mitochondria (Class 3 C0.149; M0.725; S0.004; _0.021)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 314 aa (-cTP 266)
Molecular Weight 33.93 kDA(-cTP )
PI 10.48(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
19888209(80S polysomal fraction)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help