PPDB

The Plant Proteome Database

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AT1G31410.1   putrescine-binding periplasmic protein-like protein

Lab Annot. unknown protein
Mapman: 35.1 not assigned.no ontology
Curated Location plastid nucleoid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os04g51310.1 7Oryza sativa2E-16841256750 (0)C
GRMZM2G129071_P01 3.21Zea mays5E-170412567411 (10)_
Zm00001eb430350_P002 agpv5Zea mays5E-17041256740 (0)_
Zm00001eb430350_P001 agpv5Zea mays5E-17041256740 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: SBP_bac_1(1) SBP_bac_11(1) SBP_bac_6(1) SBP_bac_8(1)
TargetP: Chloroplast (Class 3 C0.754; M0.048; S0.016; _0.186)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 524 aa (-cTP 492) (-lTP 457)
Molecular Weight 58.29 kDA(-cTP 55.00)(-lTP 51.25)
PI 9.21(-cTP 8.98)(-lTP 8.932)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

20061580(chloroplast envelope (inner+outer))
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help