PPDB

 The Plant Proteome Database

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AT1G31400.1   TRAF-like family protein
Lab Annot. meprin,TRAF and MATH domains protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G31390.1 11Arabidopsis thaliana1E-11926170810 (0)_
AT3G58350.1 11Arabidopsis thaliana5E-8227449670 (0)_
AT3G58350.2 11Arabidopsis thaliana5E-8227449670 (0)_
Os01g56490.1 7Oryza sativa3E-1713335581 (1)_
Os12g30540.1 7Oryza sativa1E-15118365828 (28)_
Os12g40520.1 7Oryza sativa3E-1112733520 (0)_
Zm00001eb408670_P002 agpv5Zea mays1E-2013839570 (0)_
Zm00001eb408670_P001 agpv5Zea mays3E-2013340580 (0)_
v1_GRMZM2G379706_P03 4a53Zea mays3E-2013338561 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HTH_WhiA(2) MATH(2) PEARLI-4(1)
TargetP: Cytoplasm (Class 4 C0.009; M0.068; S0.496; _0.832)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 278 aa (-cTP 197)
Molecular Weight 31.32 kDA(-cTP )
PI 6.39(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1352Detail       leaf [A. thaliana] total tissue Prep1_Prep2
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1479Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 6)
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1759Detail       leaf [A. thaliana] total leaf tissue Col_0
1909Detail       leaf [A. thaliana] total leaf tissue Col_0
1910Detail       leaf [A. thaliana] total leaf tissue clb19_myc
1911Detail       leaf [A. thaliana] total leaf tissue Col_0

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help