PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G30760.1   FAD-binding Berberine family protein

Lab Annot. FAD-binding Berberine protein
Mapman: 26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G30760.2 11Arabidopsis thaliana05341001000 (0)M
AT2G34790.1 11Arabidopsis thaliana053479890 (0)S
AT5G44400.1 11Arabidopsis thaliana0528607812 (2)S
Os06g35560.1 7Oryza sativa4E-14651246640 (0)S
Os06g35550.1 7Oryza sativa5E-13952844630 (0)M
Os06g35650.1 7Oryza sativa1E-13851942600 (0)S
GRMZM2G031941_P01 3.21Zea mays1E-15250446630 (0)S
Zm00001eb384940_P001 agpv5Zea mays1E-15250446630 (0)S
v1_GRMZM2G031941_P01 4a53Zea mays1E-15250446630 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: BBE(1) FAD_binding_4(1)
TargetP: Secreted (Class 1 C0.003; M0.087; S0.981; _0.017)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 534 aa (-cTP 464)
Molecular Weight 60.19 kDA(-cTP )
PI 6.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

21413152(Xylem-sap (BrassicaOleracea))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help