PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G30720.1   FAD-binding Berberine family protein

Lab Annot.
Mapman: 26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G30730.1 11Arabidopsis thaliana052780883 (3)S
AT1G34575.1 11Arabidopsis thaliana053054690 (0)S
AT1G30710.1 11Arabidopsis thaliana053053700 (0)S
Os06g35700.1 7Oryza sativa4E-12750744620 (0)S
Os06g35650.1 7Oryza sativa1E-12450443600 (0)S
Os06g35590.1 7Oryza sativa1E-12348744610 (0)S
GRMZM2G080839_P01 3.21Zea mays4E-13450745620 (0)S
Zm00001eb384900_P001 agpv5Zea mays4E-13450745620 (0)S
v1_GRMZM2G080839_P01 4a53Zea mays4E-13450745624 (4)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: BBE(1) FAD_binding_4(1) SBBP(1)
TargetP: Secreted (Class 4 C0.187; M0.021; S0.558; _0.050)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 527 aa (-cTP 446)
Molecular Weight 58.88 kDA(-cTP )
PI 9.25(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

18436743(specific to roots)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help