PPDB

 The Plant Proteome Database

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AT1G30700.1   FAD-binding Berberine family protein
Lab Annot.
Mapman: 26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G20840.1 11Arabidopsis thaliana0508547012 (0)S
AT1G11770.1 11Arabidopsis thaliana053750700 (0)S
AT1G30710.1 11Arabidopsis thaliana053252690 (0)S
Os06g35700.1 7Oryza sativa4E-14750946650 (0)S
Os06g35650.1 7Oryza sativa1E-14552144640 (0)S
Os06g35590.1 7Oryza sativa1E-14350643640 (0)S
GRMZM2G031941_P01 3.21Zea mays4E-15651146630 (0)S
Zm00001eb384940_P001 agpv5Zea mays4E-15651146630 (0)S
v1_GRMZM2G031941_P01 4a53Zea mays4E-15651146630 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BBE(1) FAD_binding_4(1)
TargetP: Secreted (Class 2 C0.168; M0.007; S0.843; _0.007)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 527 aa (-cTP 447)
Molecular Weight 59.51 kDA(-cTP )
PI 9.42(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 18436743(specific to roots)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help