PPDB

 The Plant Proteome Database

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AT1G30680.1   toprim domain-containing protein
Lab Annot. DNA primase-helicase - dually targeted mitochondria & plastid
Mapman: 28.1.5* DNA.synthesis/chromatin structure.synthesis
Curated Location mitochondria (Pubmed: 23198870 19036033 28977480 )
plastid (Pubmed: 23198870 19036033 28977480 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G30660.1 11Arabidopsis thaliana034379860 (0)_
AT1G30660.2 11Arabidopsis thaliana034377850 (0)_
AT1G30660.3 11Arabidopsis thaliana031482890 (0)_
Os06g45980.1 7Oryza sativa063063750 (0)C
Zm00001eb274090_P003 agpv5Zea mays061863770 (0)C
GRMZM2G164835_P01 3.21Zea mays0618637724 (23)C
v1_GRMZM2G164835_P02 4a53Zea mays0618637718 (18)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA_25(1) AAA_29(1) ATPase_2(1) DnaB_C(1) Toprim(1) Toprim_2(1) Toprim_4(1)
TargetP: Mitochondria (Class 4 C0.049; M0.387; S0.022; _0.005)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 709 aa (-cTP 693)
Molecular Weight 80.40 kDA(-cTP )
PI 8.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help