PPDB

PPDB	The Plant Proteome Database

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AT1G30680.1 toprim domain-containing protein

Lab Annot.

DNA primase-helicase - dually targeted mitochondria & plastid
Mapman: 28.1.5* DNA.synthesis/chromatin structure.synthesis

Curated Location

mitochondria (Pubmed: 23198870 19036033 28977480 )
plastid (Pubmed: 23198870 19036033 28977480 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G30660.1 11 Arabidopsis thaliana 0 343 79 86 0 (0) _
AT1G30660.2 11 Arabidopsis thaliana 0 343 77 85 0 (0) _
AT1G30660.3 11 Arabidopsis thaliana 0 314 82 89 0 (0) _
Os06g45980.1 7 Oryza sativa 0 630 63 75 0 (0) C
Zm00001eb274090_P003 agpv5 Zea mays 0 618 63 77 0 (0) C
GRMZM2G164835_P01 3.21 Zea mays 0 618 63 77 24 (23) C
v1_GRMZM2G164835_P02 4a53 Zea mays 0 618 63 77 18 (18) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_25(1) AAA_29(1) ATPase_2(1) DnaB_C(1) Toprim(1) Toprim_2(1) Toprim_4(1)
TargetP:	Mitochondria (Class 4 C0.049; M0.387; S0.022; _0.005)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	709 aa (-cTP 693)
Molecular Weight	80.40 kDA(-cTP )
PI	8.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

21515685(GreenCut2)

Comparative Proteomics Data