PPDB

PPDB	The Plant Proteome Database

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AT1G30610.1 pentatricopeptide (PPR) repeat-containing protein

Lab Annot.

PPR protein - Suppressor of THF1 5 (SOT5; EMB2279)
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid stroma (Pubmed: 23198870 29686056 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G30610.2 11 Arabidopsis thaliana 0 1006 97 97 1 (1) C
AT5G67570.1 11 Arabidopsis thaliana 1E-113 507 38 58 1 (1) _
AT1G12620.1 11 Arabidopsis thaliana 2E-27 351 25 45 1 (1) M
Os05g25060.1 7 Oryza sativa 7E-115 529 37 57 0 (0) C
Os01g63400.1 7 Oryza sativa 9E-22 377 22 43 0 (0) _
Os01g63400.2 7 Oryza sativa 9E-22 377 22 43 0 (0) _
Zm00001eb360170_P004 agpv5 Zea mays 0 597 52 70 0 (0) C
Zm00001eb360170_P001 agpv5 Zea mays 0 597 52 70 0 (0) C
Zm00001eb360170_P003 agpv5 Zea mays 0 597 52 70 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	23ISL(4) ANAPC3(2) Clathrin(2) Coatomer_E(1) PPR(9) PPR_1(7) PPR_2(7) PPR_3(6) P
TargetP:	Chloroplast (Class 3 C0.668; M0.068; S0.097; _0.070)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1006 aa (-cTP 966)
Molecular Weight	116.09 kDA(-cTP 111.35)
PI	9.40(-cTP 9.36)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data