PPDB

The Plant Proteome Database

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AT1G30510.1   root FNR 2

Lab Annot. FNR2 (enriched in root)
Mapman: 7.3 OPP.electron transfer
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G30510.2 11Arabidopsis thaliana0382999912 (10)C
AT1G30510.3 11Arabidopsis thaliana03171001009 (7)_
AT4G05390.1 11Arabidopsis thaliana0359839037 (26)C
Os03g57120.1 7Oryza sativa038077862 (2)C
Os07g05400.1 7Oryza sativa038076854 (4)C
Os03g57120.2 7Oryza sativa2E-16030472801 (1)C
Zm00001eb299960_P002 agpv5Zea mays039073810 (0)C
Zm00001eb059850_P001 agpv5Zea mays035381880 (0)C
GRMZM2G058760_P01 3.21Zea mays0353818813 (13)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: FAD_binding_6(1) FAD_binding_9(1) NAD_binding_1(1)
TargetP: Chloroplast (Class 1 C0.983; M0.032; S0.010; _0.018)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 381 aa (-cTP 318)
Molecular Weight 42.66 kDA(-cTP 35.77)
PI 8.77(-cTP 6.74)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
99Detail       petal [B. oleracea] plastid stroma 
119Detail       root [B. rapa] plastid stroma 
127Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
2248Detail       seedlings [A. thaliana] total tissue wild-type
2318Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
20018591(weak Cu-2+ binding (mitochondria - cell culture))
19114538(guard cells Arabidopsis leaf)
19995723(chloroplast reference proteome)
21311031(mitochondria)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help