PPDB

PPDB	The Plant Proteome Database

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AT1G30350.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G11920.1 11 Arabidopsis thaliana 0 384 70 79 0 (0) S
AT4G22090.1 11 Arabidopsis thaliana 9E-159 382 59 71 0 (0) S
AT4G22080.1 11 Arabidopsis thaliana 2E-157 356 60 74 0 (0) S
Os04g05050.2 7 Oryza sativa 2E-131 349 53 67 0 (0) _
Os04g05050.1 7 Oryza sativa 3E-130 349 53 67 0 (0) S
Os10g31910.1 7 Oryza sativa 5E-116 347 50 65 0 (0) S
v1_GRMZM2G412207_P02 4a53 Zea mays 2E-133 349 54 67 0 (0) _
GRMZM2G412207_P04 3.21 Zea mays 5E-132 349 54 67 0 (0) C
Zm00001eb420010_P001 agpv5 Zea mays 5E-132 349 54 67 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) OppC_N(1) Pectate_lyase_4(1)
TargetP:	Secreted (Class 2 C0.124; M0.011; S0.876; _0.047)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	368 aa (-cTP 356)
Molecular Weight	40.58 kDA(-cTP )
PI	9.75(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data