PPDB

The Plant Proteome Database

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AT1G30100.1   nine-cis-epoxycarotenoid dioxygenase 5

Lab Annot. 11,12 (11',12') 9-cis-epoxycarotenoid dioxygenase (NCED5)
Mapman: 16.1.4 secondary metabolism.isoprenoids.carotenoids
Curated Location plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

TAIR curated location: thylakoid12834401
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G18350.1 11Arabidopsis thaliana057968820 (0)_
AT3G14440.1 11Arabidopsis thaliana055469810 (0)C
AT1G78390.1 11Arabidopsis thaliana051771820 (0)_
Os03g44380.1 7Oryza sativa053268780 (0)M
Os12g42280.1 7Oryza sativa052867780 (0)C
Os07g05940.1 7Oryza sativa054461741 (1)C
GRMZM2G408158_P01 3.21Zea mays053663760 (0)C
Zm00001eb117480_P001 agpv5Zea mays053663760 (0)C
v1_GRMZM2G417954_P01 4a53Zea mays053662750 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RPE65(1)
TargetP: Chloroplast (Class 2 C0.920; M0.048; S0.011; _0.138)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 589 aa (-cTP 544)
Molecular Weight 65.34 kDA(-cTP 60.46)
PI 5.60(-cTP 5.35)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


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