PPDB

PPDB	The Plant Proteome Database

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AT1G30100.1 nine-cis-epoxycarotenoid dioxygenase 5

Lab Annot.

11,12 (11',12') 9-cis-epoxycarotenoid dioxygenase (NCED5)
Mapman: 16.1.4 secondary metabolism.isoprenoids.carotenoids

Curated Location

plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

TAIR curated location: thylakoid12834401

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G18350.1 11 Arabidopsis thaliana 0 579 68 82 0 (0) _
AT3G14440.1 11 Arabidopsis thaliana 0 554 69 81 0 (0) C
AT1G78390.1 11 Arabidopsis thaliana 0 517 71 82 0 (0) _
Os03g44380.1 7 Oryza sativa 0 532 68 78 0 (0) M
Os12g42280.1 7 Oryza sativa 0 528 67 78 0 (0) C
Os07g05940.1 7 Oryza sativa 0 544 61 74 1 (1) C
GRMZM2G408158_P01 3.21 Zea mays 0 536 63 76 0 (0) C
Zm00001eb117480_P001 agpv5 Zea mays 0 536 63 76 0 (0) C
v1_GRMZM2G417954_P01 4a53 Zea mays 0 536 62 75 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RPE65(1)
TargetP:	Chloroplast (Class 2 C0.920; M0.048; S0.011; _0.138)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	589 aa (-cTP 544)
Molecular Weight	65.34 kDA(-cTP 60.46)
PI	5.60(-cTP 5.35)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data