PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G29965.1   Ribosomal protein L18ae/LX family protein

Lab Annot. 60S ribosomal protein L18A (RPL18aA)
Mapman: 29.2.1.2.2.518 protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18A
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G29970.2 11Arabidopsis thaliana4E-12717599996 (5)_
AT2G34480.1 11Arabidopsis thaliana1E-1231789295210 (163)M
AT2G34480.2 11Arabidopsis thaliana2E-12317892950 (0)M
Os05g49030.1 7Oryza sativa5E-116178879235 (35)M
Os01g47660.1 7Oryza sativa1E-115178879235 (35)M
Os01g54870.1 7Oryza sativa7E-115178869126 (26)M
Zm00001eb157400_P001 agpv5Zea mays1E-11317885920 (0)M
AC230013.2_FGP007 3.21Zea mays1E-113178859251 (50)M
v1_AC230013.2_FGP007 4a53Zea mays1E-113178859247 (47)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ribosomal_L18A(1)
TargetP: Cytoplasm (Class 5 C0.023; M0.611; S0.055; _0.660)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 178 aa (-cTP 130)
Molecular Weight 21.28 kDA(-cTP )
PI 10.44(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
2013Detail       leaf [A. thaliana] total leaf tissue wt
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep

* For details about the exprimental sources click here.

Published Proteomics Data

17934214(cytosolic ribosome)
19200160(flower-stage 12)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19334764(plasma membrane (cell culture))
19888209(80S polysomal fraction)
19888209(leaves)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help