PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G29810.1   Transcriptional coactivator/pterin dehydratase

Lab Annot. dehydratase family
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G29810.2 11Arabidopsis thaliana3E-1071481001000 (0)C
AT5G51110.2 11Arabidopsis thaliana2E-231243761196 (115)C
AT5G51110.1 11Arabidopsis thaliana2E-231243761376 (287)C
Os01g47420.1 7Oryza sativa6E-5818649668 (8)M
Os01g47420.3 7Oryza sativa6E-5711965838 (8)_
Os01g47420.2 7Oryza sativa3E-5611965838 (8)M
Zm00001eb157590_P002 agpv5Zea mays4E-5613160770 (0)M
Zm00001eb157590_P001 agpv5Zea mays9E-5613160770 (0)C
GRMZM2G074821_P01 3.21Zea mays9E-5613160773 (3)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Pterin_4a(1)
TargetP: Mitochondria (Class 3 C0.348; M0.814; S0.004; _0.014)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 187 aa (-cTP 107)
Molecular Weight 21.06 kDA(-cTP )
PI 9.68(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2311Detail       leaf [A. thaliana] PG plastoglobule 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help