PPDB

The Plant Proteome Database

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AT1G29395.1   COLD REGULATED 314 INNER MEMBRANE 1

Lab Annot. COR413IM1 (cold regulated IM protein 1)
Mapman: 20.2.2 stress.abiotic.cold
Curated Location envelope-inner-integral (Pubmed: 23198870 18643950 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G29390.1 11Arabidopsis thaliana9E-132226809010 (10)C
AT1G29390.2 11Arabidopsis thaliana2E-100179799010 (10)M
AT4G37220.1 11Arabidopsis thaliana2E-1214229540 (0)_
Os05g49170.1 7Oryza sativa5E-61158568010 (10)C
Os03g55850.1 7Oryza sativa5E-1012830500 (0)_
GRMZM2G102605_P01 3.21Zea mays9E-6016056771 (1)C
v1_GRMZM2G102605_P01 4a53Zea mays9E-6016056771 (0)C
Zm00001eb296080_P001 agpv5Zea mays9E-6016056770 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RseC_MucC(2) WCOR413(1)
TargetP: Chloroplast (Class 3 C0.840; M0.336; S0.001; _0.018)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 4 TMs
Aramemnon: 6 TMs
TAT position:
Length 225 aa (-cTP 163)
Molecular Weight 24.35 kDA(-cTP 17.51)
PI 10.47(-cTP 9.80)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1933Detail       leaf [A. thaliana] chloroplast wild-type
1934Detail       leaf [A. thaliana] chloroplast wild-type
1935Detail       leaf [A. thaliana] chloroplast wild-type
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1937Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1938Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1983Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)

Comparative Proteomics Data


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